API Reference

Core Utilities

• abtools.alignment: Pairwise and Multiple Sequence Alignment
• abtools.cluster: Sequence Clustering
• abtools.log: Logging
• abtools.pipeline: Utilities for building pipelines of AbTools functions
• abtools.s3: Backup data to S3
• abtools.sequence: Sequence utilities

Secondary Annotation

• abtools.compare: Repertoire-level comparison
• abtools.correct: PCR and sequencing error correction
• abtools.finder: Mine NGS datasets for similarity to known mAbs
• abtools.phylogeny: Phylogenetic analysis of antibody lineages